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model-based analysis tiling arrays (mat) software  (Thermo Fisher)
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Thermo Fisher model-based analysis tiling arrays (mat) software
Significant overlap between genes bound by Upf1 and genes differentially expressed in a upf1 Δ strain. ( A ) Venn diagram showing the overlap between the genes/genomic regions strongly associated with Upf1 (420, identified using the P -value cut off of 10 –4 in the <t>MAT</t> <t>software)</t> and differentially expressed genes in upf1 Δ (543). The asterisk indicates that the P -value of this overlap is either 0.001 based on random sampling, or of 0.006 based on a Fisher's exact hypergeometric test (Material and Methods). ( B ) List of the 47 overlapping genes. Genes highlighted in red are up-regulated and genes highlighted in green are down-regulated. Genes which were tested and show increased Ser2 CTD phosphorylation are shown with their full names in blue.
Model Based Analysis Tiling Arrays (Mat) Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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model-based analysis of tiling-array (mat) software  (Biotechnology Information)
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Biotechnology Information model-based analysis of tiling-array (mat) software
Significant overlap between genes bound by Upf1 and genes differentially expressed in a upf1 Δ strain. ( A ) Venn diagram showing the overlap between the genes/genomic regions strongly associated with Upf1 (420, identified using the P -value cut off of 10 –4 in the <t>MAT</t> <t>software)</t> and differentially expressed genes in upf1 Δ (543). The asterisk indicates that the P -value of this overlap is either 0.001 based on random sampling, or of 0.006 based on a Fisher's exact hypergeometric test (Material and Methods). ( B ) List of the 47 overlapping genes. Genes highlighted in red are up-regulated and genes highlighted in green are down-regulated. Genes which were tested and show increased Ser2 CTD phosphorylation are shown with their full names in blue.
Model Based Analysis Of Tiling Array (Mat) Software, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/model-based+analysis+of+tiling-array+(mat)+software/model+based+analysis+of+tiling+array++mat++software/pmc02679193-214-11-30
Average 90 stars, based on 1 article reviews
model-based analysis of tiling-array (mat) software - by Bioz Stars, 2026-09
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Significant overlap between genes bound by Upf1 and genes differentially expressed in a upf1 Δ strain. ( A ) Venn diagram showing the overlap between the genes/genomic regions strongly associated with Upf1 (420, identified using the P -value cut off of 10 –4 in the MAT software) and differentially expressed genes in upf1 Δ (543). The asterisk indicates that the P -value of this overlap is either 0.001 based on random sampling, or of 0.006 based on a Fisher's exact hypergeometric test (Material and Methods). ( B ) List of the 47 overlapping genes. Genes highlighted in red are up-regulated and genes highlighted in green are down-regulated. Genes which were tested and show increased Ser2 CTD phosphorylation are shown with their full names in blue.

Journal: Nucleic Acids Research

Article Title: Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe

doi: 10.1093/nar/gkab1249

Figure Lengend Snippet: Significant overlap between genes bound by Upf1 and genes differentially expressed in a upf1 Δ strain. ( A ) Venn diagram showing the overlap between the genes/genomic regions strongly associated with Upf1 (420, identified using the P -value cut off of 10 –4 in the MAT software) and differentially expressed genes in upf1 Δ (543). The asterisk indicates that the P -value of this overlap is either 0.001 based on random sampling, or of 0.006 based on a Fisher's exact hypergeometric test (Material and Methods). ( B ) List of the 47 overlapping genes. Genes highlighted in red are up-regulated and genes highlighted in green are down-regulated. Genes which were tested and show increased Ser2 CTD phosphorylation are shown with their full names in blue.

Article Snippet: We used the Model-based Analysis of Tiling Arrays (MAT) software to analyse the Affymetrix hybridization data ( ).

Techniques: Software, Sampling